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What to Eat to Increase Good Bacteria in Your Gut

Discover what to eat to increase good bacteria in gut. Learn how prebiotics, probiotics, and polyphenols boost digestion and energy. Read our guide now!
July 09, 2026

Table of Contents

  1. Introduction
  2. Understanding the Gut Microbiome
  3. Prebiotics: The Fuel for Your Gut Garden
  4. Probiotics: Introducing Live Cultures
  5. The Role of Polyphenols
  6. The Gut-Thyroid Connection
  7. The Blue Horizon Method: A Phased Approach
  8. Understanding Our Thyroid Testing Range
  9. Lifestyle Factors: Beyond the Plate
  10. Summary of Next Steps
  11. FAQ

Introduction

Have you ever experienced that uncomfortable, heavy sensation of bloating after a meal, or felt a persistent cloud of "brain fog" that just won't lift, despite getting enough sleep? Perhaps you have noticed your energy levels dipping unpredictably, or your skin seems to flare up without an obvious cause. These "mystery symptoms" are incredibly common in the UK, and while they can be frustratingly vague, they often point toward the complex world of the gut microbiome. (bluehorizonbloodtests.co.uk)

Inside your digestive tract lives a vast community of trillions of microorganisms, including bacteria, fungi, and viruses. This is your microbiome—an internal ecosystem that functions almost like an additional organ. When this ecosystem is well-balanced, with a high diversity of "good" bacteria, your digestion is smooth, your immune system is resilient, and even your mood tends to stay more stable. However, when the "bad" bacteria begin to outnumber the beneficial ones—a state known as dysbiosis—it can lead to a ripple effect of health issues. (bluehorizonbloodtests.co.uk)

In this article, we will explore exactly what to eat to increase good bacteria in the gut, moving beyond marketing jargon to look at the science of prebiotics, probiotics, and polyphenols. We will also discuss why gut health is rarely an isolated issue and often intersects with other areas of your health, such as thyroid function and nutrient absorption. (bluehorizonbloodtests.co.uk)

At Blue Horizon, we believe that the best health decisions are made by looking at the bigger picture. Our approach—the Blue Horizon Method—always begins with a consultation with your GP to rule out underlying clinical conditions. We then encourage a structured period of self-tracking before considering private blood testing as a tool to gain a clearer snapshot of your internal health. This guide is designed to help you navigate your journey toward better gut health in a calm, responsible, and evidence-based way. If you want to explore our wider gut-related testing options, the Gut Health collection is a useful place to start. (bluehorizonbloodtests.co.uk)

Understanding the Gut Microbiome

To understand what to eat, we first need to understand who we are feeding. The "good" bacteria in your gut, primarily species from the Lactobacillus and Bifidobacterium families, perform several vital roles. They help break down complex carbohydrates that your human cells cannot digest, they produce essential vitamins like B12 and K, and they support the integrity of the gut lining, which acts as a barrier for your immune system. (bluehorizonbloodtests.co.uk)

A healthy microbiome is usually defined by two things: richness and diversity. Richness refers to the total number of bacteria present, while diversity refers to the number of different species. Think of it like a garden; a garden with fifty different types of flowers and shrubs is more resilient and vibrant than a garden with only one type of grass. (bluehorizonbloodtests.co.uk)

When we talk about "increasing good bacteria," we are usually trying to do one of two things:

  1. Introduce new bacteria: This is done via probiotic foods or supplements.
  2. Feed the bacteria already there: This is done via prebiotic foods.
    For people who want a deeper look at their gut health before changing too much at once, the What Is a Gut Microbiome Test? guide explains how Blue Horizon approaches this kind of testing. (bluehorizonbloodtests.co.uk)

If you are experiencing sudden or severe symptoms—such as intense abdominal pain, unexplained rapid weight loss, or a significant change in bowel habits—it is essential to seek urgent medical attention from your GP or call 111/999 if it is an emergency. For chronic, nagging symptoms, the following dietary strategies can be a powerful starting point. (bluehorizonbloodtests.co.uk)

Prebiotics: The Fuel for Your Gut Garden

If probiotics are the "seeds" you plant in your gut garden, prebiotics are the "fertiliser." Prebiotics are types of fibre that the human body cannot digest. Instead, they pass through the small intestine and arrive in the colon, where they become a feast for your beneficial bacteria. (bluehorizonbloodtests.co.uk)

When your good bacteria ferment these prebiotic fibres, they produce short-chain fatty acids (SCFAs), such as butyrate. These SCFAs are incredibly important; they provide energy for the cells lining your colon, reduce inflammation, and may even play a role in regulating your appetite and blood sugar. (bluehorizonbloodtests.co.uk)

Top Prebiotic Foods to Include

  • Garlic and Onions: These kitchen staples are rich in inulin and fructooligosaccharides (FOS). These specific fibres are the preferred food for Bifidobacteria. While they can sometimes cause temporary gas in people with sensitive guts, introducing them slowly can help your microbiome adapt.
  • Leeks and Asparagus: These contain similar prebiotic fibres to onions but often provide a different texture and variety of micronutrients.
  • Bananas: Specifically, slightly under-ripe (greenish) bananas are high in resistant starch. Unlike regular starch, resistant starch "resists" digestion in the small intestine and travels to the large intestine to feed the good bacteria.
  • Oats and Barley: These grains contain beta-glucan, a type of soluble fibre that has been shown to support healthy gut flora and may also help maintain healthy cholesterol levels.
  • Jerusalem Artichokes: Often called "sunchokes," these are one of the most concentrated sources of inulin available. Be cautious, as they are very potent; start with a small portion to see how your digestion responds.
  • Apples: Apples contain pectin, a prebiotic fibre that has been shown to increase the amount of Bifidobacterium and Lactobacillus in the gut. For the best results, eat the skin, as that is where much of the fibre and polyphenols reside.

Probiotics: Introducing Live Cultures

Probiotics are live microorganisms that, when consumed in adequate amounts, confer a health benefit. While the bacteria in probiotic foods do not always "colonise" (stay forever) in your gut, they have a powerful effect as they pass through. They can help crowd out harmful bacteria, interact with your immune cells, and produce beneficial enzymes. (bluehorizonbloodtests.co.uk)

In the UK, fermented foods have seen a huge resurgence in popularity. When choosing these, it is vital to look for "live" or "unpasteurised" versions. Heat-treating (pasteurisation) kills the beneficial bacteria, so a shelf-stable jar of sauerkraut in the supermarket aisle may not offer the same probiotic benefits as a chilled, raw version. For practical guidance on sample collection and at-home testing, the Finger Prick Blood Test Kits page explains how Blue Horizon handles home collection. (bluehorizonbloodtests.co.uk)

Probiotic Powerhouses

  • Live Yogurt: This is perhaps the most accessible probiotic. Look for "live and active cultures" on the label. Plain, unsweetened Greek yogurt is often the best choice to avoid the high sugar content found in many flavoured varieties, which can ironically feed the "bad" bacteria you are trying to balance.
  • Kefir: Often described as a drinkable yogurt, kefir is fermented with "kefir grains" (a symbiotic culture of bacteria and yeast). It typically contains a much wider variety of bacterial strains than standard yogurt.
  • Sauerkraut and Kimchi: These fermented cabbage products provide a double benefit: they contain live Lactobacillus bacteria and provide prebiotic fibre from the vegetables themselves. Kimchi also adds a boost of garlic, ginger, and chilli, which may have additional anti-inflammatory properties.
  • Miso and Tempeh: Derived from fermented soybeans, these are excellent options for those following a plant-based diet. Miso paste can be whisked into soups (add it after the soup has stopped boiling to preserve the bacteria), while tempeh makes a hearty protein source for stir-fries.
  • Kombucha: This fermented tea is a refreshing way to consume probiotics, but be mindful of the sugar content. Some commercial brands can be quite sweet, so check the label for a lower-sugar option.

The Role of Polyphenols

While fibre often gets all the glory in gut health conversations, polyphenols are equally important. Polyphenols are plant compounds that give fruits, vegetables, and spices their vibrant colours. Like prebiotics, most polyphenols are not well-absorbed in the small intestine; they travel down to the colon where the gut bacteria break them down into smaller, beneficial metabolites. (bluehorizonbloodtests.co.uk)

Interestingly, it is a two-way street: your gut bacteria help you absorb the benefits of polyphenols, and the polyphenols help the good bacteria grow. The How to Test Your Gut Microbiome guide is a helpful next read if you want to understand the testing side as well. (bluehorizonbloodtests.co.uk)

  • Berries: Blueberries, raspberries, and blackberries are packed with anthocyanins that support a diverse microbiome.
  • Dark Chocolate: High-quality dark chocolate (at least 70% cocoa) contains flavanols that can increase the growth of Bifidobacteria.
  • Green Tea: Rich in catechins, green tea may help reduce the growth of "bad" bacteria like Clostridium while supporting beneficial species.
  • Extra Virgin Olive Oil: Not just a healthy fat, olive oil contains unique polyphenols that have been shown to reduce inflammation in the gut lining.

The Gut-Thyroid Connection

At Blue Horizon, we often see that people investigating gut health are also struggling with symptoms like fatigue, weight changes, and low mood—symptoms that frequently overlap with thyroid issues. There is a fascinating "crosstalk" between your gut and your thyroid gland. If you want to explore the full range of thyroid testing options, our thyroid blood tests collection is the best place to begin. (bluehorizonbloodtests.co.uk)

For example, about 20% of the conversion of the inactive thyroid hormone (T4) into the active form (T3) happens in the gut. If your gut microbiome is imbalanced, this conversion may be less efficient, leading to symptoms of an underactive thyroid even if your TSH (Thyroid Stimulating Hormone) levels appear "normal" on a basic screen. Furthermore, certain nutrients required for thyroid health—such as selenium, zinc, and iodine—must be absorbed through a healthy gut lining. (bluehorizonbloodtests.co.uk)

Key Takeaway: If you have been focusing on your diet but still feel persistently exhausted or "off," it may be worth looking at your thyroid function alongside your gut health. Our thyroid panels, such as the Thyroid Gold or Platinum, include markers for TSH, Free T4, and Free T3, giving you a clearer picture of this vital connection. (bluehorizonbloodtests.co.uk)

The Blue Horizon Method: A Phased Approach

Improving your gut health is a journey, not a quick fix. We recommend a structured, three-step process to ensure you are making informed decisions. If you want to read more about the wider thinking behind this approach, the About Blue Horizon Blood Tests page is a good starting point from the site. (bluehorizonbloodtests.co.uk)

Step 1: Consult Your GP

Before making significant dietary changes or assuming your symptoms are purely gut-related, speak with your NHS GP. They can rule out serious conditions such as Coeliac disease, Inflammatory Bowel Disease (IBD), or infections. This is a vital clinical safeguard. (bluehorizonbloodtests.co.uk)

Step 2: Structured Self-Checking

Once clinical issues are ruled out, begin a "Gut Health Diary." For two to four weeks, track the following:

  • Food and Drink: Note what you eat and when.
  • Symptom Timing: Do you bloat immediately after eating, or several hours later?
  • Stool Patterns: Consistency and frequency are excellent indicators of gut transit time and health.
  • Lifestyle Factors: Track your sleep quality and stress levels, as both can significantly alter your microbiome through the "gut-brain axis."
    For readers who want to understand how this fits into testing decisions, the How Can I Check My Gut Microbiome? guide walks through the main approaches. (bluehorizonbloodtests.co.uk)

Step 3: Targeted Testing

If you have addressed the basics—adding fibre, prebiotics, and probiotics—but still feel "stuck," private blood testing can provide a helpful snapshot. While a blood test does not directly measure the bacteria in your colon, it can reveal the impact of your gut health on your wider body. (bluehorizonbloodtests.co.uk)

For instance, our Thyroid Gold and Platinum tests include "Blue Horizon Extras" like Magnesium and Cortisol. Magnesium is essential for smooth muscle contraction in the digestive tract (helping to prevent constipation), and Cortisol is a primary stress hormone that can "shut down" digestion if it remains chronically high. If you are comparing the more detailed thyroid tiers, the Thyroid Premium Silver test is a useful midpoint between Bronze and Gold. (bluehorizonbloodtests.co.uk)

Our more comprehensive panels also look at:

  • Vitamin B12 and Folate: Essential for energy and often low if the gut is not absorbing nutrients efficiently.
  • Ferritin (Iron Stores): Low iron can cause fatigue and is sometimes a sign of malabsorption.
  • Vitamin D: Crucial for immune function and maintaining the "tight junctions" of the gut lining.
  • CRP (C-Reactive Protein): A marker of general inflammation in the body.
    If you want the most complete thyroid and metabolic snapshot, the Thyroid Premium Platinum test is the most detailed option in the range. (bluehorizonbloodtests.co.uk)

By bringing these results to your GP, you move the conversation from "I feel tired" to "I can see my B12 is at the lower end of the range and my T3 conversion could be optimised." (bluehorizonbloodtests.co.uk)

Understanding Our Thyroid Testing Range

If you decide that a blood test is the right next step for you, we offer a tiered range of thyroid and metabolic panels designed to be as informative as possible. For a closer look at the entry point, you can view the Thyroid Premium Bronze test. (bluehorizonbloodtests.co.uk)

  • Bronze: This is our focused starting point. It includes TSH, Free T4, and Free T3, alongside our "Extra" markers, Magnesium and Cortisol. This helps you see the basic thyroid function and two key cofactors that influence how you feel.
  • Silver: Includes everything in Bronze, plus Thyroid Peroxidase Antibodies (TPOAb) and Thyroglobulin Antibodies (TgAb). These are essential for checking if an autoimmune response is affecting your thyroid.
  • Gold: A broader health snapshot. It includes everything in Silver plus Ferritin, Folate, Active B12, Vitamin D, and CRP. This is often the most popular choice for those with "mystery symptoms," as it checks the most common nutritional gaps.
  • Platinum: Our most comprehensive profile. It adds Reverse T3 (a marker that can show if your body is "braking" its metabolism), HbA1c (for blood sugar health), and a full iron panel.

Collection Methods: For Bronze, Silver, and Gold, you can choose a simple fingerprick kit to use at home, a Tasso device (an innovative, painless collection method), or a professional blood draw at a local clinic. The Platinum test requires a larger volume of blood, so it must be completed via a professional venous blood draw (either at a clinic or by a nurse visiting your home). If you want the full collection of thyroid testing details in one place, the thyroid blood tests collection has the full range. (bluehorizonbloodtests.co.uk)

We generally recommend a 9am sample for all thyroid testing. This ensures consistency and aligns with the natural daily fluctuations of your hormones. (bluehorizonbloodtests.co.uk)

Lifestyle Factors: Beyond the Plate

You can eat all the sauerkraut in the world, but if you are chronically stressed and sleep-deprived, your good bacteria will struggle to flourish. (bluehorizonbloodtests.co.uk)

The Gut-Brain Axis

The gut and the brain are physically connected by the vagus nerve. When you are stressed, your body enters "fight or flight" mode, diverting blood flow away from the digestive system. This can slow down digestion, leading to constipation and the growth of less-desirable bacteria. Practising mindful eating—simply sitting down and breathing deeply before a meal—can significantly improve how your body processes food. (bluehorizonbloodtests.co.uk)

Hydration

Fibre needs water to work. If you increase your intake of whole grains and legumes without increasing your water intake, you may find yourself feeling more constipated and bloated. Aim for steady hydration throughout the day, primarily from plain water or herbal teas. (bluehorizonbloodtests.co.uk)

Sleep

Studies have shown that even two nights of partial sleep deprivation can lead to subtle changes in the gut microbiome. Aim for 7-9 hours of quality sleep to give your gut (and the rest of your body) time to repair and regenerate. (bluehorizonbloodtests.co.uk)

Summary of Next Steps

Increasing the good bacteria in your gut is a rewarding process that can lead to better energy, clearer skin, and improved digestion. To recap your journey:

  1. Prioritise Variety: Aim for "30 plants a week" to provide a diverse range of prebiotic fibres and polyphenols.
  2. Incorporate Fermented Foods: Add a small serving of live yogurt, kefir, or sauerkraut daily, starting slowly to let your system adjust.
  3. Rule Out the Basics: Speak with your GP about any persistent or concerning symptoms.
  4. Track Your Progress: Use a symptom diary to identify patterns between your diet and how you feel.
  5. Consider a Snapshot: If you remain concerned about your energy or mystery symptoms, a Blue Horizon Gold or Platinum panel can help you and your GP see the bigger picture of your hormonal and nutritional health. If you are still deciding between approaches, the What Is a Gut Microbiome Test? guide is a practical next read. (bluehorizonbloodtests.co.uk)

Remember, your health is a long-term project. Small, consistent changes in what you eat are far more effective than a "detox" or a "quick fix." By nourishing your gut bacteria, you are supporting the very foundation of your well-being. (bluehorizonbloodtests.co.uk)

FAQ

Can I increase my good bacteria too quickly?

While it is tempting to overhaul your diet overnight, increasing your intake of fibre and fermented foods too rapidly can sometimes cause temporary bloating, gas, or mild stomach cramps. This is often a sign that your microbiome is changing. It is generally best to introduce one new food at a time in small portions (e.g., one tablespoon of sauerkraut or a small glass of kefir) and gradually increase the amount over several weeks. If you experience severe or persistent discomfort, always consult your GP. (bluehorizonbloodtests.co.uk)

Are probiotic supplements better than probiotic foods?

Not necessarily. Probiotic foods like yogurt, kefir, and kimchi provide a complex matrix of nutrients, enzymes, and diverse bacterial strains that supplements often lack. However, supplements can be useful for delivering specific, high-dose strains for particular concerns, such as after a course of antibiotics. At Blue Horizon, we recommend starting with whole foods first, as they support the microbiome in a more holistic way. If you do choose a supplement, look for one that lists specific strains and has been clinically researched. (bluehorizonbloodtests.co.uk)

Does sugar really kill good bacteria?

Sugar doesn't necessarily "kill" good bacteria, but it can feed the "bad" bacteria and yeasts (like Candida) that compete with them. When you consume a diet high in refined sugar and processed foods, these less-desirable microbes can flourish, potentially leading to an imbalance or "dysbiosis." Reducing refined sugar and focusing on complex, fibre-rich carbohydrates is one of the most effective ways to tip the balance back in favour of your beneficial bacteria. (bluehorizonbloodtests.co.uk)

How do I know if my gut health is actually improving?

While everyone is different, common signs of a healthier microbiome include more regular and comfortable bowel movements, reduced bloating, more stable energy levels throughout the day, and clearer skin. You might also find that you have fewer cravings for sugary foods as your bacterial balance shifts. Because gut health is closely linked to nutrient absorption, you may also see improvements in blood markers like B12 or Ferritin over time, which you can monitor through our Gold or Platinum health panels in consultation with your GP. (bluehorizonbloodtests.co.uk)