Back to all blogs

How To Increase Good Bacteria In Gut For Better Health

Learn how increase good bacteria in gut naturally. Discover expert tips on diet, fibre, and lifestyle to boost your microbiome and improve health today!
July 14, 2026

Table of Contents

  1. Introduction
  2. Understanding the Gut Microbiome
  3. The Blue Horizon Method: A Phased Approach
  4. How to Increase Good Bacteria: Dietary Strategies
  5. Lifestyle Factors That Influence Gut Health
  6. How Blood Testing Complements Gut Health
  7. Practical Steps to Start Today
  8. Summary of the Journey
  9. FAQ

Introduction

Have you ever experienced a period of time where you felt "off," but couldn't quite put your finger on why? Perhaps you’ve been struggling with persistent bloating after meals, a sudden lack of energy that caffeine can’t fix, or even "brain fog" that makes concentrating on simple tasks feel like a chore. In the UK, millions of people visit their GP every year with these types of vague, "mystery" symptoms. Often, the root cause isn't a single, easily identifiable illness, but rather a subtle imbalance in the trillions of microscopic inhabitants living within our digestive system.

This internal ecosystem is known as the gut microbiome. Far from being just a site for digestion, your gut acts as a central hub for your immune system, your mental well-being, and even your skin health. When the balance of "good" versus "bad" bacteria shifts—a state known as dysbiosis—it can ripple through your entire body, affecting everything from your mood to your metabolism.

In this article, we will explore the science of the gut microbiome and provide a practical, evidence-based guide on how to increase good bacteria in your gut. We will cover the essential roles these microbes play, the lifestyle factors that disrupt them, and the dietary changes that can help them flourish.

At Blue Horizon, we believe that health is a journey, not a quick fix. We advocate for a phased, responsible approach to wellness: starting with a consultation with your GP, moving through a period of self-reflection and lifestyle tracking, and finally using targeted blood testing to gain a clearer snapshot of your internal health. This guide is designed to help you navigate that journey with confidence and clarity.

Understanding the Gut Microbiome

To understand how to increase good bacteria, we first need to understand what they are and why they are there. The gut microbiome is a complex community of bacteria, viruses, fungi, and other microorganisms residing primarily in your large intestine (the colon).

While the word "bacteria" often carries negative connotations related to illness, the vast majority of these microbes are commensal or beneficial. In fact, there are more microbial cells in your body than there are human cells. We live in a symbiotic relationship with them: we provide them with a home and food (in the form of the things we eat), and in return, they perform vital functions that our own DNA cannot.

The Role of Good Bacteria

"Good" bacteria, such as strains from the Lactobacillus and Bifidobacterium families, are essential for several reasons:

  • Nutrient Synthesis: They help produce certain vitamins, such as Vitamin K and several B vitamins (like B12 and folate), which are crucial for energy and blood health.
  • Immune Support: Around 70% to 80% of your immune cells are located in the gut. Good bacteria "train" these cells to distinguish between harmless food particles and dangerous pathogens.
  • Protection Against Pathogens: By occupying space and consuming resources, beneficial bacteria prevent harmful "bad" bacteria from gaining a foothold.
  • Short-Chain Fatty Acid (SCFA) Production: When good bacteria ferment fibre in your colon, they produce SCFAs like butyrate. These compounds provide energy to the cells lining your gut and help reduce systemic inflammation.
  • The Gut-Brain Axis: Your gut and brain are in constant communication via the vagus nerve. Microbes produce neurotransmitters, including serotonin (often called the "happy hormone"), which can influence your mood and anxiety levels.

Safety Note: While mild digestive changes are common, certain symptoms require urgent medical attention. If you experience sudden or severe abdominal pain, blood in your stools, unexplained weight loss, or difficulty swallowing, please contact your GP immediately or visit A&E. In an emergency, always call 999.

The Blue Horizon Method: A Phased Approach

Before jumping into supplements or radical diet changes, we recommend following a structured path to ensure your approach is safe and effective.

Phase 1: Rule Out the Basics with your GP

If you are experiencing persistent digestive issues, your first port of call should always be your GP. It is important to rule out clinical conditions such as Coeliac disease, Inflammatory Bowel Disease (IBD), or Irritable Bowel Syndrome (IBS). Your doctor may perform standard NHS tests, such as stool samples or basic blood markers, to ensure there isn't an underlying pathology that needs immediate medical management.

Phase 2: The Self-Check and Diary

Once you have spoken with a professional, begin a period of self-observation. For two to four weeks, keep a detailed diary of:

  • Food and Drink: What you eat and, crucially, when you eat it.
  • Symptom Timing: Do you feel bloated immediately after eating, or several hours later?
  • Lifestyle Factors: Track your sleep quality, stress levels at work, and how much exercise you are getting.
  • Bowel Habits: Note the frequency and consistency of your movements.

This data is invaluable. It helps move the conversation away from vague feelings toward specific patterns that you can discuss with a health professional. If you are new to private testing, our guide on how to get a blood test explains the process clearly.

Phase 3: Targeted Testing

If you have addressed the basics and still feel "stuck," or if you want a more detailed look at how your lifestyle is impacting your physiology, a private blood test can provide a helpful snapshot. While we do not offer "bacteria tests," our comprehensive panels such as the Thyroid Premium Gold test and Thyroid Premium Platinum test look at markers that are directly influenced by gut health, such as Vitamin B12, Folate, Iron, and Vitamin D levels. If your gut isn't healthy, you may struggle to absorb these vital nutrients, even if your diet is excellent.

How to Increase Good Bacteria: Dietary Strategies

The most powerful tool you have for changing your microbiome is your fork. Because gut bacteria have a very short lifespan, the composition of your microbiome can begin to shift within just a few days of a dietary change.

Focus on Fibre (Prebiotics)

If probiotics are the "seeds" of a healthy gut, prebiotics are the "fertiliser." Prebiotics are types of indigestible fibre that pass through the small intestine unchanged and land in the colon, where they become a feast for beneficial bacteria.

To increase your good bacteria, aim for a wide variety of plant-based fibres:

  • Inulin-rich foods: Chicory root, Jerusalem artichokes, garlic, onions, and leeks.
  • Resistant Starches: Slightly green bananas, cooked and cooled potatoes or pasta, and legumes (beans, lentils, chickpeas).
  • Pectin: Found in apples and pears.

The Power of Fermented Foods (Probiotics)

Fermented foods naturally contain live, active cultures that can temporarily colonise the gut and support the existing microbial community. When choosing these, look for products that are "raw" or "unpasteurised," as the heat used in pasteurisation kills the beneficial bacteria. For more ideas on gut-focused options, see our Gut Health collection.

  • Live Yogurt and Kefir: These are excellent sources of Lactobacillus. Look for versions with no added sugar.
  • Sauerkraut and Kimchi: Fermented cabbage dishes that provide both beneficial bacteria and fibre.
  • Kombucha: A fermented tea. Be mindful of the sugar content in some commercial brands.
  • Miso and Tempeh: Fermented soy products that are staples in many traditional diets.

"Eat the Rainbow" for Polyphenols

Polyphenols are plant compounds that act as antioxidants. While our bodies don't absorb them very well in the upper digestive tract, our gut bacteria love them. Foods high in polyphenols include:

  • Berries (blueberries, raspberries, strawberries).
  • Nuts and seeds (especially walnuts and flaxseeds).
  • Dark chocolate (at least 70% cocoa).
  • Green tea and, in moderation, red wine.

Reduce Ultra-Processed Foods and Added Sugars

While "good" bacteria thrive on fibre, many "bad" bacteria and yeasts (like Candida) thrive on simple sugars. A diet high in ultra-processed foods—which often contain emulsifiers, artificial sweeteners, and preservatives—can disrupt the delicate mucous lining of the gut and reduce microbial diversity.

Key Takeaway: Diversity is the hallmark of a healthy gut. Instead of eating the same few vegetables every week, aim for "30 plants a week." This includes fruits, vegetables, nuts, seeds, herbs, spices, and whole grains.

Lifestyle Factors That Influence Gut Health

How you live is just as important as what you eat. Your gut bacteria are highly sensitive to your environment and your body's internal rhythms.

Prioritise Consistent Sleep

Your gut microbiome has its own "circadian rhythm," much like you do. Certain bacteria are more active during the day, while others perform "clean-up" duties at night. When your sleep is disrupted—whether through late nights, shift work, or poor sleep hygiene—it can throw these microbial cycles out of sync. Aim for 7 to 9 hours of quality sleep, and try to go to bed and wake up at similar times each day.

Manage Chronic Stress

The "gut-brain axis" is a two-way street. When you are stressed, your body produces cortisol, the "stress hormone." High levels of cortisol can increase intestinal permeability (sometimes called "leaky gut") and change the composition of the bacteria in your digestive tract.

At Blue Horizon, we include Cortisol and Magnesium in all our thyroid and health panels (Bronze, Silver, Gold, and Platinum) because we recognise how central these markers are to your overall resilience. Low magnesium levels are often linked to higher stress and poor muscle relaxation, which can manifest as sluggish digestion or constipation.

Exercise Regularly

Physical activity isn't just for your heart and muscles; it also benefits your microbes. Studies have shown that regular, moderate exercise—such as brisk walking, swimming, or cycling—can increase the diversity of the gut microbiome and promote the growth of bacteria that produce health-promoting short-chain fatty acids. If you want more background on the collection options, our About Finger-Prick Testing guide is a helpful place to start.

Be Mindful of Antibiotics

Antibiotics are life-saving medications, but they are "broad-spectrum," meaning they can't distinguish between the bad bacteria causing an infection and the good bacteria in your gut. A single course of antibiotics can significantly alter the microbiome for weeks or even months.

Always take antibiotics exactly as prescribed by your GP, but consider supporting your gut with fermented foods and plenty of fibre during and after your treatment to help the "good" population recover.

How Blood Testing Complements Gut Health

You might wonder how a blood test can tell you about your gut. While a blood test doesn't count the bacteria in your colon, it measures the consequences of your gut health.

Nutrient Absorption

If your gut microbiome is imbalanced or if the lining of your gut is inflamed, you may not absorb nutrients efficiently. Our Thyroid Premium Gold test is a popular choice for those looking at the "bigger picture." It includes:

  • Vitamin B12 & Folate: Essential for energy and nervous system function. Low levels can indicate issues with absorption in the small intestine.
  • Vitamin D: Crucial for immune function; a healthy gut helps regulate Vitamin D, and Vitamin D, in turn, helps maintain a healthy gut barrier.
  • Ferritin (Iron stores): Low iron can cause fatigue and is often the first sign of digestive malabsorption or blood loss.

Systemic Inflammation

If the gut barrier is compromised, substances that should stay in the gut can enter the bloodstream, triggering a low-level immune response. Our Thyroid Premium Platinum test includes C-Reactive Protein (CRP), a marker of systemic inflammation. While it doesn't point specifically to the gut, an elevated CRP in the absence of an obvious infection can be a helpful clue that something—potentially in the digestive system—is causing the body stress.

The Thyroid Connection

There is a significant link between the thyroid and the gut. Thyroid hormones (T3 and T4) influence the speed at which food moves through your digestive tract (motility). If your thyroid is underactive, digestion slows down, which can lead to constipation and an overgrowth of certain bacteria.

Our Thyroid Premium Silver test includes autoimmune markers (TPOAb and TgAb), while our Thyroid blood tests collection adds the nutrient markers mentioned above. This helps you and your GP see if a digestive issue might actually be rooted in a hormonal imbalance, or vice versa.

Practical Steps to Start Today

Improving your gut health doesn't require a total life overhaul overnight. Small, consistent changes are often the most sustainable.

  1. Add, Don't Just Subtract: Instead of focusing on what you "can't" have, focus on adding one new plant-based food to your plate each day.
  2. Stay Hydrated: Water is essential for the mucosal lining of the gut and for moving fibre through your system. Without enough water, a high-fibre diet can lead to constipation.
  3. Chew Thoroughly: Digestion begins in the mouth. Breaking your food down mechanically makes it much easier for your stomach acid and gut enzymes to do their jobs later on.
  4. Slow Down: Try to eat in a relaxed state. Eating on the run or while stressed shifts your body into "fight or flight" mode, which diverts blood flow away from the digestive system.
  5. Track and Review: Use your food and symptom diary to look for patterns. After 4 weeks, review it. If symptoms persist, take that diary to your GP.

Summary of the Journey

The path to a healthier gut is individual. What works for a friend might not work for you, which is why the "Blue Horizon Method" is so important:

  • Consult your GP first to rule out clinical conditions and discuss concerning symptoms.
  • Use a structured self-check approach by tracking your diet, lifestyle, and symptoms in a diary.
  • Consider a Blue Horizon test if you want a structured "snapshot" of your nutrient status and inflammation markers to guide a more productive conversation with a professional.

By focusing on a diverse, fibre-rich diet, managing your stress, and ensuring you have the right nutrient foundations, you can create an environment where your "good" bacteria—and you—can truly thrive.

FAQ

How long does it take to increase good bacteria in the gut?

Research suggests that the gut microbiome can begin to change within 24 to 48 hours of a significant dietary shift. However, to achieve a stable, diverse, and "healthy" microbiome, you usually need to maintain these dietary and lifestyle changes for several months. Consistency is more important than short-term intensity.

Should I take a probiotic supplement?

While probiotic supplements can be helpful in specific scenarios—such as during or after a course of antibiotics—they are not a replacement for a healthy diet. Many experts recommend getting your probiotics from food sources like live yogurt, kefir, and sauerkraut first, as these provide a complex matrix of nutrients and multiple strains of bacteria. Always consult your GP before starting new supplements, especially if you have a compromised immune system or a complex medical history.

Can stress really affect my gut bacteria?

Yes. Through the gut-brain axis, chronic stress can change the environment of the gut. High levels of cortisol can affect the transit time of food, the production of stomach acid, and the integrity of the gut lining. This altered environment can favour the growth of less beneficial bacteria over "good" bacteria. This is why stress management techniques are a vital part of any gut health plan.

Which blood test is best for checking my gut health?

While blood tests don't measure gut bacteria directly, they measure how well your gut is functioning. We often recommend the Thyroid Premium Gold test or the Thyroid Premium Platinum test for those with gut concerns. These tests check for nutrient deficiencies (like B12, Folate, and Iron) that often occur if the gut is not absorbing food correctly, as well as markers of inflammation (CRP). You can view current options on our thyroid blood tests collection. Always share your results with your GP to ensure they are interpreted in the context of your overall health.